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BioCyc accounts provide several benefits. Through your BioCyc account you can:

• Customize the appearance of BioCyc pages

• Store organism sets for comparative operations

• Configure default settings for the Omics Viewers

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Pathway Tools Query Page

Query All (by name or EC#) Protein (by name or EC#) Pathway (by name) Reaction (by name or EC#) Compound (by name) Gene (by name) RNA (by name)

• To retrieve objects by name, first select the type of object you wish to retrieve, then enter the name of the object and click Submit. All objects containing that name as a substring will be returned. To search for multiple objects in one query, enter multiple names or EC numbers, separated by commas.

Browse Ontology: Pathways  EC Hierarchy  Compounds  Gene Ontology  MultiFun Gene Taxonomy 

• Each database contains classification hierarchies for pathways, for reactions (the enzyme nomenclature system), for compounds, and for genes. Select a classification system to browse.

Cellular Overview Diagram/Omics Viewer (not available for MetaCyc)

Comparative Analysis and Statistics

• Generate summary tables that compute statistics across one or more selected organism databases. For example, view statistics on the transported substrates of one organism, or compare the transported substrates of several organisms.

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Page generated by SRI International Pathway Tools version 12.5 on Thu Jul 2, 2009.
EcoCyc version 12.5.